bionty.base.ExperimentalFactor

class bionty.base.ExperimentalFactor(organism=None, source=None, version=None, **kwargs)

Bases: PublicOntology

Experimental Factor.

1. Experimental Factor Ontology Edits of terms are coordinated and reviewed on: https://www.ebi.ac.uk/ols/ontologies/efo

Parameters:

  • source (Literal['efo'] | None, default: None) – The key of the source in the local.yml versions file. Get all available databases with .display_available_sources().

  • version (str | None, default: None) – The version of the ontology. Typically a date or an actual version. Get available versions with .display_available_sources().

Also see: bionty.core.PublicOntology

Attributes

property fields: set

All PublicOntology entity fields.

property organism

The name of Organism.

property source

Name of the source.

property version

Version of the source.

Methods

to_pronto()

The Pronto Ontology object.

See: https://pronto.readthedocs.io/en/stable/api/pronto.Ontology.html

Return type:

Ontology