bionty.base.Pathway

class bionty.base.Pathway(organism=None, source=None, version=None, **kwargs)

Bases: PublicOntology

Pathway.

1. Gene Ontology Edits of terms are coordinated and reviewed on: https://bioportal.bioontology.org/ontologies/GO/?p=summary

2. Pathway Ontology Edits of terms are coordinated and reviewed on: https://bioportal.bioontology.org/ontologies/PW/?p=summary

Parameters:

  • organism (Literal['all'] | None, default: None) – name of Organism entity.

  • source (Literal['go', 'pw'] | None, default: None) – The key of the source in the local.yml versions file. Get all available databases with .display_available_sources().

  • version (str | None, default: None) – The version of the ontology. Typically a date or an actual version. Get available versions with .display_available_sources().

Attributes

property fields: set

All PublicOntology entity fields.

property organism

The name of Organism.

property source

Name of the source.

property version

Version of the source.

Methods