bionty.ExperimentalFactor

class bionty.ExperimentalFactor(name: str, ontology_id: str | None, abbr: str | None, synonyms: str | None, description: str | None, parents: list[ExperimentalFactor], source: Source | None)

Bases: BioRecord, TracksRun, TracksUpdates

Experimental factors - Experimental Factor Ontology.

Notes

For more info, see tutorials Manage biological registries and ExperimentalFactor.

Bulk create ExperimentalFactor records via from_values().

Examples

>>> standard_name = bionty.ExperimentalFactor.public().standardize(["scRNA-seq"])
>>> record = bionty.ExperimentalFactor.from_source(name=standard_name)

Simple fields

uid: str

A universal id (hash of selected field).

name: str

Name of the experimental factor.

ontology_id: str | None

Ontology ID of the experimental factor.

abbr: str | None

A unique abbreviation of experimental factor.

synonyms: str | None

Bar-separated (|) synonyms that correspond to this experimental factor.

description: str | None

Description of the experimental factor.

molecule: str | None

Molecular experimental factor, parsed from EFO.

instrument: str | None

Instrument used to measure the experimental factor, parsed from EFO.

measurement: str | None

Phenotypic experimental factor, parsed from EFO.

created_at: datetime

Time of creation of record.

updated_at: datetime

Time of last update to record.

Methods