bionty.Pathway

class bionty.Pathway(name: str, ontology_id: str | None, abbr: str | None, synonyms: str | None, description: str | None, parents: list[Pathway], source: Source | None)

Bases: BioRecord, TracksRun, TracksUpdates

Pathways - Gene Ontology, Pathway Ontology.

Notes

For more info, see tutorials Manage biological registries and Pathway.

Bulk create Pathway records via from_values().

Examples

>>> record = bionty.Pathway.from_source(ontology_id="GO:1903353")
>>> record.save()

Simple fields

uid: str

A universal id (hash of selected field).

name: str

Name of the pathway.

ontology_id: str | None

Ontology ID of the pathway.

abbr: str | None

A unique abbreviation of pathway.

synonyms: str | None

Bar-separated (|) synonyms that correspond to this pathway.

description: str | None

Description of the pathway.

created_at: datetime

Time of creation of record.

updated_at: datetime

Time of last update to record.

Methods